QTLExperiment - S4 classes for QTL summary statistics and metadata
QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the 'SummarizedExperiment' class and contains functions for creating, merging, and subsetting objects. 'QTLExperiment' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.
Last updated 24 days ago
functionalgenomicsdataimportdatarepresentationinfrastructuresequencingsnpsoftware
4.89 score 1 stars 1 packages 13 scripts 116 downloadsmultistateQTL - Toolkit for the analysis of multi-state QTL data
A collection of tools for doing various analyses of multi-state QTL data, with a focus on visualization and interpretation. The package 'multistateQTL' contains functions which can remove or impute missing data, identify significant associations, as well as categorise features into global, multi-state or unique. The analysis results are stored in a 'QTLExperiment' object, which is based on the 'SummarisedExperiment' framework.
Last updated 24 days ago
functionalgenomicsgeneexpressionsequencingvisualizationsnpsoftware
4.65 score 9 scripts 156 downloads