Introduction | Installation | Simulating data | Estimate parameters from GTEx | Simulate multi-state QTL data | Dealing with missing data | Calling significance | Plotting global patterns of sharing | Pairwise sharing | Upset plots | Characterizing multi-state QTL patterns | Categorizing multi-state QTL tests | Visualizing multi-state QTL | Session Info

Motivation | Installation | Creating QTLExperiment instances | Manually | From QTL summary statistics for each state | From mashr data format | Basic object manipulation | 4. Working with assays | Working with critical meta data | Session Info